Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs34116162 chr6:25937652 G/A 6.63E-5 520 41.27 33.7 4.1 KM Plot
KIRC rs34172338 chr6:2408176 G/A 5.61E-8 526 39.85 40.58 12.25 KM Plot
KIRC rs34208789 chr16:31685334 A/AT 4.89E-5 521 26.07 43.43 39.47 KM Plot
KIRC rs34233736 chr6:25934099 A/T 2.11E-5 522 41.27 33.82 4.1 KM Plot
KIRC rs34351439 chr6:25833010 T/C 2.86E-5 526 42.2 30.3 4.1 KM Plot
KIRC rs34391493 chr6:26022648 A/C 7.68E-10 510 41 37.2 3.37 KM Plot
KIRC rs34418651 chr2:67670602 T/C 2.55E-7 523 39.47 39.53 2.03 KM Plot
KIRC rs34438599 chr19:56148495 A/AT 1.42E-7 507 43.03 37.35 6.02 KM Plot
KIRC rs34523152 chr10:81932261 T/C 2.14E-6 521 38.83 50.07 3.93 KM Plot
KIRC rs34610626 chr6:2429607 C/A 7.2E-8 526 40 39.17 12.25 KM Plot
KIRC rs34630841 chr3:48343261 G/A 3.31E-5 520 39.27 41.27 19.13 KM Plot
KIRC rs34644650 chr3:48346955 GCAAT/G 3.23E-5 522 39.62 41.27 19.13 KM Plot
KIRC rs34728236 chr3:48259108 A/G 6.5E-5 514 39.7 41.27 21.12 KM Plot
KIRC rs34749846 chr3:48347168 T/G 3.23E-5 522 39.62 41.27 19.13 KM Plot
KIRC rs34753339 chr2:2613594 G/A 3.3E-5 527 39.23 45.13 8.35 KM Plot